[1] 马帅, 王书学, 王桂梅, 等.林可霉素利多卡因凝胶质量风险探究[J].中国药品标准, 2022, 23(4):399
MA S, WANG S X, WANG G M, et al. Investigation of the quality risk of lincomycin hydrochloride and lidocaine hydrochloride gel[J]. Drug Stand China,2022, 23(4):399
[2] 楚雍烈, 杨娥.宏基因组学及其技术的研究进展[J].西安交通大学学报(医学版), 2008, 29(6):601
CHU YL, YANG E. Research progress of metagenomics and its technology[J]. J Xi'an Jiaotong Univ(Med Sci), 2008, 29(6):601
[3] WU LY, WEN CQ, QIN YJ, et al. Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis[J].BMC Microbiol, 2015, 15(1): 125
[4] 钱修伟, 武雅蓉, 郝彤宇, 等.基于宏基因组测序的细菌株水平研究进展[J].疾病监测, 2022, 37(11):1408
QIAN XW, WU YR, HAO TY, et al. Strain-level bacterial analysis from shotgun metagenomics: a review[J]. Dis Surveill, 2022, 37(11):1408
[5] 李琼琼, 范一灵, 宋明辉, 等.基于高通量测序的6类中药饮片污染微生物群落特征分析[J].药物分析杂志, 2019, 39(11):1945
LI QQ,FAN YL,SONG MH, et al. Microbial community composition analysis of six Chinese herbal pieces through 16S rRNA high-throughput sequencing[J]. Chin J Pharm Anal, 2019, 39(11):1945
[6] 车阳, 李樱红, 李宏, 等.宏基因组测序技术检测胎菊饮片表面微生物污染方法研究[J].中国现代应用药学, 2022, 39(15):1949
CHE Y, LI YH, LI H, et al. Study of metagenomic sequencing technology to detect microbial contamination on the surface of Chrysanthemi Flos[J]. Chin J Mod Appl Pharm, 2022, 39(15):1949
[7] BUYTAERS FE, SALTYKOVA A, MATTHEUS W, et al. Application of a strain-level shotgun metagenomics approach on food samples: resolution of the source of a Salmonella food-borne outbreak[J]. Microb Genom, 2021, 7(4):000547. doi: 10.1099/mgen.0.000547
[8] MU A, KWONG JC, ISLES NS, et al. Reconstruction of the genomes of drug-resistant pathogens for outbreak investigation through metagenomic sequencing[J]. mSphere, 2019, 4(1): e00529
[9] TRUONG DT, FRANZOSA EA, TICKLE TL, et al. MetaPhlAn2 for enhanced metagenomic taxonomic profiling[J]. Nat Methods, 2015, 12 (10): 902
[10] ROONEY AP, PRICE PJ, EHRHARDT C, et al. Phylogeny and molecular taxonomy of the Bacillus subtilis species complex and description of Bacillus subtilis subsp. inaquosorum subsp. nov[J].Int J Syst Evol Microbiol, 2009, 59:2429
[11] VERA A, PABLO SF, MARIA RC, et al. Development of a high-resolution melting-based approach for efficient differentiation among Bacillus cereus group isolates[J]. Foodborne Pathog Dis, 2012, 9(9):777
[12] CHEN ML, TSEN HY. Discrimination of Bacillus cereus and Bacillus thuringiensis with 16S rRNA and gyrB gene based PCR primers and sequencing of their annealing sites[J]. J Appl Microbiol, 2002, 92(5):912
[13] 颜静婷, 乔凯, 蔡燕飞.rpoB、gyrA、cheA基因在芽孢杆菌鉴定上的应用[J].浙江农业学报, 2022, 34(1):128
YAN JT, QIAO K, CAI YF. Application of rpoB, gyrA and cheA genes in identifying Bacillus genus[J]. Acta Agric Zhejiang, 2022, 34(1):128
[14] FERGUS GP, MARGARET B, LES WJB, et al. Population structure and evolution of the Bacillus cereus group[J]. J Bacteriol, 2004, 186(23):7959
[15] KUO WS, CHAK KF. Identification of novel cry-type genes from Bacillus thuringiensis stains on the basis of restriction fragment length polymorphism of the PCR-amplified DNA[J]. Appl Environ Microbiol, 1996, 62(4):1369
[16] 潘虎, 卢向阳, 董俊德, 等.未培养微生物研究策略概述[J].生物学杂志, 2012, 29(1):79
PAN H, LU XY, DONG JD, et al. Research progress of strategies on nonculturable microorganisms[J]. J Biol, 2012, 29(1):79
[17] 赵亮, 王莉, 汪地强, 等.白酒微生物群落研究技术现状与二代测序数据分析方略[J]. 酿酒科技, 2016(7):88
ZHAO L, WANG L, WANG DQ, et al. Present status in research technology of liquor-making microbial communities & next-generation sequencing data analysis[J]. Liquor-Making Sci Technol, 2016(7):88
[18] BOKULICH NA, LEWIS ZT, BOUNDY-MILLS K, et al. A new perspective on microbial landscapes within food production[J]. Curr Opin Biotechnol, 2016, 37:182
[19] 谭宇翔, 胡函, 李陈浩, 等.基于宏基因组数据的菌株分析方法及其应用[J].生物工程学报, 2020, 36(12): 2610
TAN YX, HU H, LI CH, et al. Research progress and applications of strain analysis based on metagenomic data[J]. Chin J Biotechnol, 2020, 36(12): 2610
[20] LOZUPONE CA, KNIGHT R. UniFrac: a new phylogenetic method for comparing microbial communities[J]. Appl Environ Microbiol, 2005, 71(12):8228
[21] FAITH DP, MINCHIN PR, BELBIN L. Compositional dissimilarity as a robust measure of ecological distance[J]. Vegetatio, 1987, 69:57
